Cute! I have mice too. The reason why you got all blacks is because the male and female's gene's didn't match. She looks like a pink eye ressesive yellow, the male must have been a dark eyed banded or spotted with a tan belly.
Have you been holding the babies? You should start holding them daily, take Mom out and put her into a safe play place where she can not see and hold each baby. This way they will be very tame

Most male mice even litter mates can not live together, Seeing that they are from a petshop and where not bred too be friendly(some breeders have been working on making males more social with each other, some have had success others not). I would seperate the males. I had 2 brothers who looked like they where living together fine and one day I came home to a bloody mess. Ben just decieded he didn't like Joe anymore.