You could try setting their cages next to each other so they can both feel safe in their own cage while interacting. Did you do the whole cage swap thing so they could get used to each others scents?
Id try the cages next to each other a few inches between, to keep from toes getting bit if it ends up being a issue with aggression.
Maybe the scared one just isn't prepared to be meeting new friends so she's nervous/scared?
At the moment are all 4 just free ranging together?
Their cages have been side-by-side since quarantine was done, which was quite some time ago! I also did do the cage swap thing a little while ago, and yes, they are free-ranging together, and have been for awhile as well. Everything was going good... I'm hoping something just happened recently and my older rat will get over it!
Recently today and late last night, it seems that the frightened rat's cage-mate (the most dominant of the 4) has been sticking up for her. Whenever all 3 are around, and the younger-dominant rat starts chasing the older-passive rat, my older-dominant rat chases the younger-one and "shows her who is boss"... I hope this helps as well!