Fruit flies are the worst, I mean at least they aren't like big fat flies, but they are annoying. I suggest you wash out your food bowl really well after having fruit in it.
You could put out traps for them, but honestly traps seem to attract more. If you'd want to try a trap get a bottle or an empty jar fill the bottom with apple cider vinegar or red wine and add dish soap. After you do that seal the top with saran wrap (plastic wrap) and rubber band it on. Make tiny holes in the plastic wrap and viola! you have a trap. Be aware that this might attract more fruit flies in the end.
Another solution you could try is to do a major clean. Clean out your sinks (kitchen, bathroom, shower and or tub) wash out your trash can, and immediately wipe up any food debris. Also keep fruits and veggies in the fridge during this time. It's annoying, but in the end the fruit flies won't find anywhere they'd want to lay more eggs and they'll die off.